last-align

o+Class List

o+File List

|o*last-102/scripts/last-dotplot.py

|o*last-102/scripts/last-map-probs.py

|o*last-102/scripts/last-remove-dominated.py

|o*last-102/scripts/maf-convert.py

|o*last-102/scripts/maf-join.py

|o*last-102/scripts/maf-swap.py

|o*last-102/scripts/maf2html.py

|o*last-102/src/Alignment.cc

|o*last-102/src/Alignment.hh

|o*last-102/src/AlignmentPot.cc

|o*last-102/src/AlignmentPot.hh

|o*last-102/src/AlignmentWrite.cc

|o*last-102/src/Alphabet.cc

|o*last-102/src/Alphabet.hh

|o*last-102/src/Centroid.cc

|o*last-102/src/Centroid.hh

|o*last-102/src/CyclicSubsetSeed.cc

|o*last-102/src/CyclicSubsetSeed.hh

|o*last-102/src/DiagonalTable.cc

|o*last-102/src/DiagonalTable.hh

|o*last-102/src/fileMap.cc

|o*last-102/src/fileMap.hh

|o*last-102/src/GeneralizedAffineGapCosts.cc

|o*last-102/src/GeneralizedAffineGapCosts.hh

|o*last-102/src/GeneticCode.cc

|o*last-102/src/GeneticCode.hh

|o*last-102/src/io.cc

|o*last-102/src/io.hh

|o*last-102/src/LambdaCalculator.cc

|o*last-102/src/LambdaCalculator.hh

|o*last-102/src/lastal.cc

|o*last-102/src/LastalArguments.cc

|o*last-102/src/LastalArguments.hh

|o*last-102/src/lastdb.cc

|o*last-102/src/LastdbArguments.cc

|o*last-102/src/LastdbArguments.hh

|o*last-102/src/Mmap.hh

|o*last-102/src/MultiSequence.cc

|o*last-102/src/MultiSequence.hh

|o*last-102/src/MultiSequenceQual.cc

|o*last-102/src/QualityScoreCalculator.cc

|o*last-102/src/QualityScoreCalculator.hh

|o*last-102/src/ScoreMatrix.cc

|o*last-102/src/ScoreMatrix.hh

|o*last-102/src/SegmentPair.cc

|o*last-102/src/SegmentPair.hh

|o*last-102/src/SegmentPairPot.cc

|o*last-102/src/SegmentPairPot.hh

|o*last-102/src/SegmentPairPssm.cc

|o*last-102/src/stringify.hh

|o*last-102/src/SubsetSuffixArray.cc

|o*last-102/src/SubsetSuffixArray.hh

|o*last-102/src/SubsetSuffixArraySort.cc

|o*last-102/src/VectorOrMmap.hh

|o*last-102/src/version.hh

|o*last-102/src/Xdrop3FrameAligner.cc

|o*last-102/src/Xdrop3FrameAligner.hh

|o*last-102/src/XdropAligner.cc

|o*last-102/src/XdropAligner.hh

|o*last-102/src/XdropAlignerPssm.cc

|o*last-102/src/CA_code/lambda_calculator.c

|o*last-102/src/CA_code/lambda_calculator.h

|o*last-102/src/CA_code/lubksb.c

|o*last-102/src/CA_code/ludcmp.c

|o*last-102/src/CA_code/nrutil.c

|\*last-102/src/CA_code/nrutil.h

\+Directory Hierarchy