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Sourcecode: last-align version File versions  Download package

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Here is a list of all documented files with brief descriptions:
last-102/scripts/last-dotplot.py [code]
last-102/scripts/last-map-probs.py [code]
last-102/scripts/last-remove-dominated.py [code]
last-102/scripts/maf-convert.py [code]
last-102/scripts/maf-join.py [code]
last-102/scripts/maf-swap.py [code]
last-102/scripts/maf2html.py [code]
last-102/src/Alignment.cc [code]
last-102/src/Alignment.hh [code]
last-102/src/AlignmentPot.cc [code]
last-102/src/AlignmentPot.hh [code]
last-102/src/AlignmentWrite.cc [code]
last-102/src/Alphabet.cc [code]
last-102/src/Alphabet.hh [code]
last-102/src/Centroid.cc [code]
last-102/src/Centroid.hh [code]
last-102/src/CyclicSubsetSeed.cc [code]
last-102/src/CyclicSubsetSeed.hh [code]
last-102/src/DiagonalTable.cc [code]
last-102/src/DiagonalTable.hh [code]
last-102/src/fileMap.cc [code]
last-102/src/fileMap.hh [code]
last-102/src/GeneralizedAffineGapCosts.cc [code]
last-102/src/GeneralizedAffineGapCosts.hh [code]
last-102/src/GeneticCode.cc [code]
last-102/src/GeneticCode.hh [code]
last-102/src/io.cc [code]
last-102/src/io.hh [code]
last-102/src/LambdaCalculator.cc [code]
last-102/src/LambdaCalculator.hh [code]
last-102/src/lastal.cc [code]
last-102/src/LastalArguments.cc [code]
last-102/src/LastalArguments.hh [code]
last-102/src/lastdb.cc [code]
last-102/src/LastdbArguments.cc [code]
last-102/src/LastdbArguments.hh [code]
last-102/src/Mmap.hh [code]
last-102/src/MultiSequence.cc [code]
last-102/src/MultiSequence.hh [code]
last-102/src/MultiSequenceQual.cc [code]
last-102/src/QualityScoreCalculator.cc [code]
last-102/src/QualityScoreCalculator.hh [code]
last-102/src/ScoreMatrix.cc [code]
last-102/src/ScoreMatrix.hh [code]
last-102/src/SegmentPair.cc [code]
last-102/src/SegmentPair.hh [code]
last-102/src/SegmentPairPot.cc [code]
last-102/src/SegmentPairPot.hh [code]
last-102/src/SegmentPairPssm.cc [code]
last-102/src/stringify.hh [code]
last-102/src/SubsetSuffixArray.cc [code]
last-102/src/SubsetSuffixArray.hh [code]
last-102/src/SubsetSuffixArraySort.cc [code]
last-102/src/VectorOrMmap.hh [code]
last-102/src/version.hh [code]
last-102/src/Xdrop3FrameAligner.cc [code]
last-102/src/Xdrop3FrameAligner.hh [code]
last-102/src/XdropAligner.cc [code]
last-102/src/XdropAligner.hh [code]
last-102/src/XdropAlignerPssm.cc [code]
last-102/src/CA_code/lambda_calculator.c [code]
last-102/src/CA_code/lambda_calculator.h [code]
last-102/src/CA_code/lubksb.c [code]
last-102/src/CA_code/ludcmp.c [code]
last-102/src/CA_code/nrutil.c [code]
last-102/src/CA_code/nrutil.h [code]

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